Plot Raw Median Fluorescent Intensity of Standard Curve Data

This function gets the standards data and plots the standard curves.

Usage

plotStds(sero_data, std_point = 10, location, experiment_name)

Arguments

sero_data

Output from `readSeroData()`.

std_point

Standard Point Curve: 5 = 5-point curve, 10 = 10-point curve. Default = 10. Value is an integer.

location

"PNG" or "ETH" to filter WEHI standard curve data.

experiment_name

User-input experiment name.

Value

- Dot and line plot of standard curves (S1-S10) with PNG or Ethiopia stds underneath (ggplot). - WEHI-acceptable standard curve data on background of plot with user data.

Author

Dionne Argyropoulos, Shazia Ruybal-Pesantez

Examples

# \donttest{
# Example demonstrating how to process bead count data.
# These files are included in the SeroTrackR package under inst/extdata.

your_raw_data <- c(
  system.file("extdata", "example_MAGPIX_plate1.csv", package = "SeroTrackR"),
  system.file("extdata", "example_MAGPIX_plate2.csv", package = "SeroTrackR"),
  system.file("extdata", "example_MAGPIX_plate3.csv", package = "SeroTrackR")
)

# Read in raw MAGPIX data
sero_data <- readSeroData(
  raw_data = your_raw_data,
  platform = "magpix"
)
#> PASS: File example_magpix_plate1.csv successfully validated.
#> PASS: File example_magpix_plate2.csv successfully validated.
#> PASS: File example_magpix_plate3.csv successfully validated.

# Plot Standards
plotStds(
  sero_data = sero_data,
  location = "ETH",
  experiment_name = "experiment1"
)
#> Warning: Ignoring unknown aesthetics: text


# }