Read Raw Serological Data

This function imports the raw data from the Magpix or Bioplex machine and matches the sample names from the plate layout based on their plate/well location.

Usage

readSeroData(raw_data, platform, version = "4.2", raw_data_filenames = NULL)

Arguments

raw_data

String with the raw data path.

platform

"magpix", "bioplex" or "intelliflex".

version

xPONENT software version. For "magpix" can be 4.2 or 4.3. Default: 4.2.

raw_data_filenames

String with the raw data filename path. Default is NA as it can be deduced from raw_data. Needs to be a parameter for the PvSeroApp.

Value

List of data frames: (i) raw data output, (ii) cleaned all results (iii) count data, (iv) blanks only, (v) standards only, (vi) run information.

Author

Dionne Argyropoulos, Shazia Ruybal-Pesántez

Examples

# Example raw data files (MAGPIX platform)
your_raw_data <- c(
  system.file("extdata", "example_MAGPIX_plate1.csv", package = "SeroTrackR"),
  system.file("extdata", "example_MAGPIX_plate2.csv", package = "SeroTrackR"),
  system.file("extdata", "example_MAGPIX_plate3.csv", package = "SeroTrackR")
)

# Read and combine raw serology data
sero_data <- readSeroData(
  raw_data = your_raw_data,
  platform = "magpix"
)
#> PASS: File example_magpix_plate1.csv successfully validated.
#> PASS: File example_magpix_plate2.csv successfully validated.
#> PASS: File example_magpix_plate3.csv successfully validated.