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Plot the Median Fluorescent Intensity (MFI) to Relative Antibody Units (RAU) Results Data

Source: R/plotModel.R
plotModel.Rd

This function gets the Median Fluorescent Intensity (MFI) to Relative Antibody Units (RAU) model results data and plots the model fits based on `MFItoRAU`.

Usage

plotModel(mfi_to_rau_output, sero_data)

Arguments

mfi_to_rau_output

Output from `MFItoRAU()`.

sero_data

Output from `readSeroData()`.

Value

List of dot and line plots of MFI to RAU model standard curve, with each one representing an individual plate (ggplot).

Author

Shazia Ruybal-Pesantez, Dionne Argyropoulos

Examples

# \donttest{

# Step 0: Load example raw data
your_raw_data <- c(
  system.file("extdata", "example_MAGPIX_plate1.csv", package = "SeroTrackR"),
  system.file("extdata", "example_MAGPIX_plate2.csv", package = "SeroTrackR")
)
your_plate_layout <- system.file(
  "extdata",
  "example_platelayout_1.xlsx",
  package = "SeroTrackR"
)

# Step 1: Read serology data and plate layout
sero_data  <- readSeroData(your_raw_data,"magpix")
#> PASS: File example_magpix_plate1.csv successfully validated.
#> PASS: File example_magpix_plate2.csv successfully validated.
plate_list <- readPlateLayout(your_plate_layout, sero_data)
#> Plate layouts correctly identified!

# Step 2: Process counts and perform quality control
qc_results <- runQC(sero_data, plate_list)

# Step 3: Convert MFI to RAU using ETH beads
mfi_to_rau <- MFItoRAU(
  sero_data = sero_data,
  plate_list = plate_list,
  qc_results = qc_results
)

# Step 4: Plot Model Results
plotModel(mfi_to_rau, sero_data)
#> $`1`

#> 
#> $`2`

#> 
# }