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Plot Raw Median Fluorescent Intensity Blanks Data

Source: R/plotBlanks.R
plotBlanks.Rd

This function gets the blank sample data and plots the blank sample Median Fluorescent Intensity (MFI) values.

Usage

plotBlanks(sero_data, experiment_name)

Arguments

sero_data

Output from `readSeroData()`.

experiment_name

User-input experiment name.

Value

Bar plot showing whether MFI values for the blanks for each antigen per plate is above or below the threshold MFI = 50 (ggplot).

Author

Shazia Ruybal-Pesantez, Dionne Argyropoulos

Examples

# \donttest{
# Example demonstrating how to process bead count data.
# These files are included in the SeroTrackR package under inst/extdata.

your_raw_data <- c(
  system.file("extdata", "example_MAGPIX_plate1.csv", package = "SeroTrackR"),
  system.file("extdata", "example_MAGPIX_plate2.csv", package = "SeroTrackR"),
  system.file("extdata", "example_MAGPIX_plate3.csv", package = "SeroTrackR")
)

# Read in raw MAGPIX data
sero_data <- readSeroData(
  raw_data = your_raw_data,
  platform = "magpix"
)
#> PASS: File example_magpix_plate1.csv successfully validated.
#> PASS: File example_magpix_plate2.csv successfully validated.
#> PASS: File example_magpix_plate3.csv successfully validated.

# Plot blanks
plotBlanks(
  sero_data = sero_data,
  experiment_name = "experiment1"
)


# }