Generate QC PDF Report

Usage

renderQCReport(
  raw_data,
  plate_layout,
  platform,
  experiment_name = "experiment1",
  date = format(Sys.Date(), "%Y%m%d"),
  experiment_notes = "no notes",
  location,
  std_point = 10,
  path = "."
)

Arguments

raw_data: A string with the raw data path.
plate_layout: A string with the plate layout path.
platform: A string: "magpix", "intelliflex", or "bioplex".
experiment_name: A string for experiment name.
date: A string or Date. Defaults to today's date.
experiment_notes: A string of notes. Default is "no notes".
location: A string for experiment location: "ETH" or "PNG" accepted.
std_point: Standard Point Curve: 5 = 5-point curve, 10 = 10-point curve, "PvLDH" for LDH specific curve. Default = 10. Value is an integer.
path: Output path for the PDF file. Defaults to current working directory.

Value

Rendered PDF report.

Author

Dionne Argyropoulos

Examples


## Not run on CRAN because it requires interactive rendering and can be slow:
if (interactive()) {

  # Example raw data files (MAGPIX platform)
  your_raw_data <- c(
    system.file("extdata", "example_MAGPIX_plate1.csv", package = "SeroTrackR"),
    system.file("extdata", "example_MAGPIX_plate2.csv", package = "SeroTrackR"),
    system.file("extdata", "example_MAGPIX_plate3.csv", package = "SeroTrackR")
  )

  # Example plate layout file
  your_plate_layout <- system.file(
    "extdata",
    "example_platelayout_1.xlsx",
    package = "SeroTrackR"
  )

  # Generate the QC PDF report
  renderQCReport(
    raw_data     = your_raw_data,
    plate_layout = your_plate_layout,
    platform     = "magpix",
    location     = "ETH"
  )
}